Post-Doctoral Fellow Level 1/ 2 in Multi-Omic Data Analysis

Job title:

Post-Doctoral Fellow Level 1/ 2 in Multi-Omic Data Analysis

Company:

Teagasc

Job description

Job DescriptionDuration:Temporary Post-Doctoral Appointment. This is an externally funded non Grant-in-Aid contract post, the indicative duration of which is 42 months, subject to contract. A panel may be formed from which future similar vacancies may be filled; such a panel will remain active for a maximum period of 12 months.Basic Function:Teagasc seeks to recruit an enthusiastic, ambitious post-doctoral fellow to funded position as part of the VistaMilk research centre. The successful candidate will have experience in the analysis of shotgun microbiome data from a variety of environments including soil, gut and rumen and the generation of outputs from that data. Additionally the candidate will benchmark other omic tools including metabolomics and proteomics and develop tools for multi-omic dataset integrationBackground:The Teagasc Food Programme is located at two sites, Moorepark Food Research Centre (Fermoy, Co. Cork) and Ashtown Food Research Centre (Dublin 15). The programme is based on applied research which involves significant industry engagement. In addition to its own programme, Teagasc participates in many large research initiatives (APC Microbiome Ireland, VistaMilk Centre, the Dairy Processing Technology Centre, Meat Technology Ireland, Food for Health Ireland) with industry partners and other research providers in the university sector. The current role will be located at the Moorepark research site, where significant food and health related research takes place and which hosts relevant infrastructure such as the Moorepark Technology Ltd. pilot plant, a dedicated food safety laboratory, the Teagasc DNA Sequencing Centre, The National Food Imaging Centre and a planned Food Biotest facility.The Teagasc post-doctoral programme provides training and development opportunities for early career scientists that enhances their experience of learning and equips them with the necessary skills for the next stage of their chosen career in research. Appointees to a Teagasc Post-Doctoral Fellowship will be required to undertake a Level 9 Professional Diploma in Researcher Development delivered by University College Dublin (UCD).This professional diploma is a flexible, modular programme which embraces a blended learning approach to align with the Post-Doctoral Fellow’s role in Teagasc. It is designed to develop competencies and transferable skills in research, professionalism, communication and career development. The majority of the programme is delivered online with the remaining elements delivered in-person at Teagasc locations. This blended approach affords the Post-Doctoral Fellow the opportunity to meet and network with other Teagasc colleagues. During the course of the diploma Post-Doctoral Fellows will have access to a full range of supports including the UCD library, writing centre and careers centre.Research Ireland research centre ( ), which has been operating out of Teagasc Moorepark since 2018, is entering its second 6-year phase (2024-2030). The VistaMilk Research Ireland Centre aims to be an agent of growth for the Irish dairy industry by being a world leader in fundamental and translational research for precision pasture-based dairying. VistaMilk’s vision for Phase II will advance the construction of a federated set of digital twins, each representing a module in the soil-to-gut pathway but with the ability for upstream and downstream communication and interaction – a system-of-systems. Such an integrated collection of independent systems for the dairy sector will enable whole system scenario modelling of a multitude of features and perturbations such as climate change adaptation, policy, farm advice, and research/hypothesis generation, the scale of which has never before been achieved. The outcome is informed direction and policy on how best to tackle Ireland’s unique challenges.VistaMilk represents a unique collaboration between 14 Agri-Food and ICT research institutes and leading Irish/multinational food and ICT companies. The Centre is hosted by Teagasc, the national agency with responsibility for agriculture and food research.This is a research focused training role, the primary purpose of which is to provide early career scientists with the opportunity to develop their research skills and competencies.The Post-Doctoral Fellow will, while working in conjunction with senior research staff, gain insight and experience into a variety of areas including the processes of project and budgetary management, publishing in peer-reviewed academic journals, writing grant applications, and attracting external funding; the development of active collaboration with relevant national and international research communities; the development of communication and presentation skills, leadership and management skills, and overall career development.Modules will be conducted under the supervision and direction Orla O’Sullivan Or other designated manager in conjunction with the Head of Department.Job ObjectivesDuties & Responsibilities specific to this project:

• Responsible for the analysis of shotgun metagenomic data .
• Integration of multi-omic datasets.
• Liaising with other partners from VistaMilk.
• Be willing to regularly upskill, including through attending workshops and training courses, in this and related areas.
• Engage in Education and Public Engagement activities.

Additional Duties & Responsibilities:

• To interpret research findings and prepare scientific and popular press publications.
• To disseminate research findings to a variety of audiences as appropriate.
• To assist Teagasc in meeting the commitments of the Quality Customer Service Charter and Action Plan.
• To comply with all relevant Teagasc policies and procedures.
• Fully co-operate with the provisions made for ensuring the health, safety and welfare of themselves, fellow staff and non-Teagasc staff and co-operate with management in enabling Teagasc to comply with legal obligations. This includes full compliance with the responsibilities outlined in the Safety Statement.
• To actively participate in the Teagasc Post Doctoral Fellowship programme and review processes, and to undertake all Post Doctoral fellowship training and associated duties as agreed in the Training & Development Plan.
• To take up additional duties as they may arise and be assigned by management.

Skills RequirementThis section outlines the qualifications, skills, knowledge and/or experience that the successful candidate would be required to demonstrate for successful discharge of the responsibilities of the post. Applications will be assessed on how well candidates satisfy these criteria.Essential

• PhD in Bioinformatics, Molecular Biology, Microbiology or related field.
• Relevant research experience not to exceed 3 years’ post-PhD
• Demonstrated research and technical expertise in analysis of shotgun sequence data from microbiomes and combining of multi-moic datasets.
• Evidence of research activity (publications, conference presentations, awards) and future scholarly output (working papers, research proposals etc)
• Excellent project management, analytical, report writing and data analysis skills
• An ability to collaborate with team members and PhD students to help build research knowledge and skill and to guide professional development
• Commitment to teamwork and collaborating with colleagues as per our Teagasc Together ethos
• Excellent communication skills (oral, written, presentation) with an ability to enable effective knowledge and technology transfer
• Ability to generate new ideas, unique concepts, models and solutions

Desirable

• Experience in setting own research agenda.
• Evidence of teamwork and collaboration with relevant partners.

Expected salary

€43128 per year

Location

Fermoy, Co Cork

Job date

Thu, 28 Nov 2024 03:32:11 GMT

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